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data analysis imagej fiji  (Oxford Instruments)


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    Structured Review

    Oxford Instruments data analysis imagej fiji
    Data Analysis Imagej Fiji, supplied by Oxford Instruments, used in various techniques. Bioz Stars score: 99/100, based on 44064 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/imagej+analysis/Imaris/pm40957995-596-0-3
    Average 99 stars, based on 44064 article reviews
    data analysis imagej fiji - by Bioz Stars, 2026-09
    99/100 stars

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    Related Articles

    Incubation:

    Article Title: Protocol for spatial quantitative analysis of cell division events across the epidermis of developing Hibiscus trionum petals.
    Article Snippet: .. Prior to starting, ensure that all solutions, especially the EdU incubation medium, are prepared and that imaging and image analysis software (e.g., ImageJ, Imaris and R) are properly installed and configured. ..

    Article Title: Protocol for spatial quantitative analysis of cell division events across the epidermis of developing Hibiscus trionum petals
    Article Snippet: .. Prior to starting, ensure that all solutions, especially the EdU incubation medium, are prepared and that imaging and image analysis software (e.g., ImageJ, Imaris and R) are properly installed and configured. ..

    Imaging:

    Article Title: Protocol for spatial quantitative analysis of cell division events across the epidermis of developing Hibiscus trionum petals.
    Article Snippet: .. Prior to starting, ensure that all solutions, especially the EdU incubation medium, are prepared and that imaging and image analysis software (e.g., ImageJ, Imaris and R) are properly installed and configured. ..

    Article Title: Nuclear import of malaria RNA rewires splicing in host immune cells.
    Article Snippet: 13 Briefly, THP-1 cells were grown in complete RPMI-1640 (Sartorius, 01-100-1A) supplemented with 10% fetal bovine serum (Sigma, F7524), 1% non-essential amino acids (Sartorius, 01-340-1B), and 0.1% penicillin/streptomycin solution (Diagnovum, .. REAGENT or RESOURCE SOURCE IDENTIFIER RNeasy Mini Kit Qiagen Cat# 74104 Qubit RNA BR assay kit Thermo Fisher Scientific Cat# Q10210 TruSeq Stranded mRNA Library Prep Kit Illumina N/A HiScribe T7 In Vitro Transcription Kit New England Biolabs Cat# E2040S HCR v3.0 smFISH assay (B1/B2/B3 amplifier system) Molecular Instruments https://www.molecularinstruments.com Deposited data RNA-seq data This paper PRJNA1258730 Proteomics (SILAC-MS) data This paper PXD054139 Proteomics (RNA antisense purification-MS) data This paper PXD054139 Experimental models: Cell lines Plasmodium falciparum NF54 strain MR4 MRA-1000 Human monocytic cell line THP-1 ATCC TIB-202 Oligonucleotides qPCR primers for Pf and human genes This paper See Tables S1 and S2 RNA antisense probes for ETRAMP11.2 This paper See Table S2 Software and algorithms ImageJ/FIJI Schneider et al. https://imagej.net/ij/ Imaris Cell Module Bitplane (Oxford Instruments) https://imaris.oxinst.com SpectroFlo Software v3.3.0 Cytek Biosciences https://cytekbio.com QuantStudio Software v1.1 Applied Biosystems N/A MaxQuant v1.5.2.8 Cox & Mann https://www.maxquant.org IDEAS v6.2 software Amnis Corp. N/A R v4.3.3 R Foundation https://www.r-project.org Perseus software MaxQuant https://maxquant.net/perseus/ STAR aligner Dobin et al. https://github.com/alexdobin/STAR DESeq2 Love et al. https://bioconductor.org DEXSeq Anders et al. https://bioconductor.org Other Nanosight NS300 Malvern Instruments N/A Cytek Aurora spectral flow cytometer Cytek Biosciences N/A ImageStreamX mark II imaging flow-cytometer Amnis Corp. N/A Leica DMi8 confocal microscope Leica Microsystems N/A Q Exactive HFX mass spectrometer Thermo Fisher Scientific N/A JPK Nanowizard III AFM JPK Instruments N/A Cell Reports 45, 116953, February 24, 2026 17 D910-100ML) in a humidified incubator at 37 ◦ C in 5% CO 2 . ..

    Article Title: Protocol for spatial quantitative analysis of cell division events across the epidermis of developing Hibiscus trionum petals
    Article Snippet: .. Prior to starting, ensure that all solutions, especially the EdU incubation medium, are prepared and that imaging and image analysis software (e.g., ImageJ, Imaris and R) are properly installed and configured. ..

    Software:

    Article Title: Protocol for spatial quantitative analysis of cell division events across the epidermis of developing Hibiscus trionum petals.
    Article Snippet: .. Prior to starting, ensure that all solutions, especially the EdU incubation medium, are prepared and that imaging and image analysis software (e.g., ImageJ, Imaris and R) are properly installed and configured. ..

    Article Title: Nuclear import of malaria RNA rewires splicing in host immune cells.
    Article Snippet: 13 Briefly, THP-1 cells were grown in complete RPMI-1640 (Sartorius, 01-100-1A) supplemented with 10% fetal bovine serum (Sigma, F7524), 1% non-essential amino acids (Sartorius, 01-340-1B), and 0.1% penicillin/streptomycin solution (Diagnovum, .. REAGENT or RESOURCE SOURCE IDENTIFIER RNeasy Mini Kit Qiagen Cat# 74104 Qubit RNA BR assay kit Thermo Fisher Scientific Cat# Q10210 TruSeq Stranded mRNA Library Prep Kit Illumina N/A HiScribe T7 In Vitro Transcription Kit New England Biolabs Cat# E2040S HCR v3.0 smFISH assay (B1/B2/B3 amplifier system) Molecular Instruments https://www.molecularinstruments.com Deposited data RNA-seq data This paper PRJNA1258730 Proteomics (SILAC-MS) data This paper PXD054139 Proteomics (RNA antisense purification-MS) data This paper PXD054139 Experimental models: Cell lines Plasmodium falciparum NF54 strain MR4 MRA-1000 Human monocytic cell line THP-1 ATCC TIB-202 Oligonucleotides qPCR primers for Pf and human genes This paper See Tables S1 and S2 RNA antisense probes for ETRAMP11.2 This paper See Table S2 Software and algorithms ImageJ/FIJI Schneider et al. https://imagej.net/ij/ Imaris Cell Module Bitplane (Oxford Instruments) https://imaris.oxinst.com SpectroFlo Software v3.3.0 Cytek Biosciences https://cytekbio.com QuantStudio Software v1.1 Applied Biosystems N/A MaxQuant v1.5.2.8 Cox & Mann https://www.maxquant.org IDEAS v6.2 software Amnis Corp. N/A R v4.3.3 R Foundation https://www.r-project.org Perseus software MaxQuant https://maxquant.net/perseus/ STAR aligner Dobin et al. https://github.com/alexdobin/STAR DESeq2 Love et al. https://bioconductor.org DEXSeq Anders et al. https://bioconductor.org Other Nanosight NS300 Malvern Instruments N/A Cytek Aurora spectral flow cytometer Cytek Biosciences N/A ImageStreamX mark II imaging flow-cytometer Amnis Corp. N/A Leica DMi8 confocal microscope Leica Microsystems N/A Q Exactive HFX mass spectrometer Thermo Fisher Scientific N/A JPK Nanowizard III AFM JPK Instruments N/A Cell Reports 45, 116953, February 24, 2026 17 D910-100ML) in a humidified incubator at 37 ◦ C in 5% CO 2 . ..

    Article Title: Protocol for spatial quantitative analysis of cell division events across the epidermis of developing Hibiscus trionum petals
    Article Snippet: .. Prior to starting, ensure that all solutions, especially the EdU incubation medium, are prepared and that imaging and image analysis software (e.g., ImageJ, Imaris and R) are properly installed and configured. ..

    In Vitro:

    Article Title: Nuclear import of malaria RNA rewires splicing in host immune cells.
    Article Snippet: 13 Briefly, THP-1 cells were grown in complete RPMI-1640 (Sartorius, 01-100-1A) supplemented with 10% fetal bovine serum (Sigma, F7524), 1% non-essential amino acids (Sartorius, 01-340-1B), and 0.1% penicillin/streptomycin solution (Diagnovum, .. REAGENT or RESOURCE SOURCE IDENTIFIER RNeasy Mini Kit Qiagen Cat# 74104 Qubit RNA BR assay kit Thermo Fisher Scientific Cat# Q10210 TruSeq Stranded mRNA Library Prep Kit Illumina N/A HiScribe T7 In Vitro Transcription Kit New England Biolabs Cat# E2040S HCR v3.0 smFISH assay (B1/B2/B3 amplifier system) Molecular Instruments https://www.molecularinstruments.com Deposited data RNA-seq data This paper PRJNA1258730 Proteomics (SILAC-MS) data This paper PXD054139 Proteomics (RNA antisense purification-MS) data This paper PXD054139 Experimental models: Cell lines Plasmodium falciparum NF54 strain MR4 MRA-1000 Human monocytic cell line THP-1 ATCC TIB-202 Oligonucleotides qPCR primers for Pf and human genes This paper See Tables S1 and S2 RNA antisense probes for ETRAMP11.2 This paper See Table S2 Software and algorithms ImageJ/FIJI Schneider et al. https://imagej.net/ij/ Imaris Cell Module Bitplane (Oxford Instruments) https://imaris.oxinst.com SpectroFlo Software v3.3.0 Cytek Biosciences https://cytekbio.com QuantStudio Software v1.1 Applied Biosystems N/A MaxQuant v1.5.2.8 Cox & Mann https://www.maxquant.org IDEAS v6.2 software Amnis Corp. N/A R v4.3.3 R Foundation https://www.r-project.org Perseus software MaxQuant https://maxquant.net/perseus/ STAR aligner Dobin et al. https://github.com/alexdobin/STAR DESeq2 Love et al. https://bioconductor.org DEXSeq Anders et al. https://bioconductor.org Other Nanosight NS300 Malvern Instruments N/A Cytek Aurora spectral flow cytometer Cytek Biosciences N/A ImageStreamX mark II imaging flow-cytometer Amnis Corp. N/A Leica DMi8 confocal microscope Leica Microsystems N/A Q Exactive HFX mass spectrometer Thermo Fisher Scientific N/A JPK Nanowizard III AFM JPK Instruments N/A Cell Reports 45, 116953, February 24, 2026 17 D910-100ML) in a humidified incubator at 37 ◦ C in 5% CO 2 . ..

    RNA Sequencing:

    Article Title: Nuclear import of malaria RNA rewires splicing in host immune cells.
    Article Snippet: 13 Briefly, THP-1 cells were grown in complete RPMI-1640 (Sartorius, 01-100-1A) supplemented with 10% fetal bovine serum (Sigma, F7524), 1% non-essential amino acids (Sartorius, 01-340-1B), and 0.1% penicillin/streptomycin solution (Diagnovum, .. REAGENT or RESOURCE SOURCE IDENTIFIER RNeasy Mini Kit Qiagen Cat# 74104 Qubit RNA BR assay kit Thermo Fisher Scientific Cat# Q10210 TruSeq Stranded mRNA Library Prep Kit Illumina N/A HiScribe T7 In Vitro Transcription Kit New England Biolabs Cat# E2040S HCR v3.0 smFISH assay (B1/B2/B3 amplifier system) Molecular Instruments https://www.molecularinstruments.com Deposited data RNA-seq data This paper PRJNA1258730 Proteomics (SILAC-MS) data This paper PXD054139 Proteomics (RNA antisense purification-MS) data This paper PXD054139 Experimental models: Cell lines Plasmodium falciparum NF54 strain MR4 MRA-1000 Human monocytic cell line THP-1 ATCC TIB-202 Oligonucleotides qPCR primers for Pf and human genes This paper See Tables S1 and S2 RNA antisense probes for ETRAMP11.2 This paper See Table S2 Software and algorithms ImageJ/FIJI Schneider et al. https://imagej.net/ij/ Imaris Cell Module Bitplane (Oxford Instruments) https://imaris.oxinst.com SpectroFlo Software v3.3.0 Cytek Biosciences https://cytekbio.com QuantStudio Software v1.1 Applied Biosystems N/A MaxQuant v1.5.2.8 Cox & Mann https://www.maxquant.org IDEAS v6.2 software Amnis Corp. N/A R v4.3.3 R Foundation https://www.r-project.org Perseus software MaxQuant https://maxquant.net/perseus/ STAR aligner Dobin et al. https://github.com/alexdobin/STAR DESeq2 Love et al. https://bioconductor.org DEXSeq Anders et al. https://bioconductor.org Other Nanosight NS300 Malvern Instruments N/A Cytek Aurora spectral flow cytometer Cytek Biosciences N/A ImageStreamX mark II imaging flow-cytometer Amnis Corp. N/A Leica DMi8 confocal microscope Leica Microsystems N/A Q Exactive HFX mass spectrometer Thermo Fisher Scientific N/A JPK Nanowizard III AFM JPK Instruments N/A Cell Reports 45, 116953, February 24, 2026 17 D910-100ML) in a humidified incubator at 37 ◦ C in 5% CO 2 . ..

    Multiplex sample analysis:

    Article Title: Nuclear import of malaria RNA rewires splicing in host immune cells.
    Article Snippet: 13 Briefly, THP-1 cells were grown in complete RPMI-1640 (Sartorius, 01-100-1A) supplemented with 10% fetal bovine serum (Sigma, F7524), 1% non-essential amino acids (Sartorius, 01-340-1B), and 0.1% penicillin/streptomycin solution (Diagnovum, .. REAGENT or RESOURCE SOURCE IDENTIFIER RNeasy Mini Kit Qiagen Cat# 74104 Qubit RNA BR assay kit Thermo Fisher Scientific Cat# Q10210 TruSeq Stranded mRNA Library Prep Kit Illumina N/A HiScribe T7 In Vitro Transcription Kit New England Biolabs Cat# E2040S HCR v3.0 smFISH assay (B1/B2/B3 amplifier system) Molecular Instruments https://www.molecularinstruments.com Deposited data RNA-seq data This paper PRJNA1258730 Proteomics (SILAC-MS) data This paper PXD054139 Proteomics (RNA antisense purification-MS) data This paper PXD054139 Experimental models: Cell lines Plasmodium falciparum NF54 strain MR4 MRA-1000 Human monocytic cell line THP-1 ATCC TIB-202 Oligonucleotides qPCR primers for Pf and human genes This paper See Tables S1 and S2 RNA antisense probes for ETRAMP11.2 This paper See Table S2 Software and algorithms ImageJ/FIJI Schneider et al. https://imagej.net/ij/ Imaris Cell Module Bitplane (Oxford Instruments) https://imaris.oxinst.com SpectroFlo Software v3.3.0 Cytek Biosciences https://cytekbio.com QuantStudio Software v1.1 Applied Biosystems N/A MaxQuant v1.5.2.8 Cox & Mann https://www.maxquant.org IDEAS v6.2 software Amnis Corp. N/A R v4.3.3 R Foundation https://www.r-project.org Perseus software MaxQuant https://maxquant.net/perseus/ STAR aligner Dobin et al. https://github.com/alexdobin/STAR DESeq2 Love et al. https://bioconductor.org DEXSeq Anders et al. https://bioconductor.org Other Nanosight NS300 Malvern Instruments N/A Cytek Aurora spectral flow cytometer Cytek Biosciences N/A ImageStreamX mark II imaging flow-cytometer Amnis Corp. N/A Leica DMi8 confocal microscope Leica Microsystems N/A Q Exactive HFX mass spectrometer Thermo Fisher Scientific N/A JPK Nanowizard III AFM JPK Instruments N/A Cell Reports 45, 116953, February 24, 2026 17 D910-100ML) in a humidified incubator at 37 ◦ C in 5% CO 2 . ..

    Purification:

    Article Title: Nuclear import of malaria RNA rewires splicing in host immune cells.
    Article Snippet: 13 Briefly, THP-1 cells were grown in complete RPMI-1640 (Sartorius, 01-100-1A) supplemented with 10% fetal bovine serum (Sigma, F7524), 1% non-essential amino acids (Sartorius, 01-340-1B), and 0.1% penicillin/streptomycin solution (Diagnovum, .. REAGENT or RESOURCE SOURCE IDENTIFIER RNeasy Mini Kit Qiagen Cat# 74104 Qubit RNA BR assay kit Thermo Fisher Scientific Cat# Q10210 TruSeq Stranded mRNA Library Prep Kit Illumina N/A HiScribe T7 In Vitro Transcription Kit New England Biolabs Cat# E2040S HCR v3.0 smFISH assay (B1/B2/B3 amplifier system) Molecular Instruments https://www.molecularinstruments.com Deposited data RNA-seq data This paper PRJNA1258730 Proteomics (SILAC-MS) data This paper PXD054139 Proteomics (RNA antisense purification-MS) data This paper PXD054139 Experimental models: Cell lines Plasmodium falciparum NF54 strain MR4 MRA-1000 Human monocytic cell line THP-1 ATCC TIB-202 Oligonucleotides qPCR primers for Pf and human genes This paper See Tables S1 and S2 RNA antisense probes for ETRAMP11.2 This paper See Table S2 Software and algorithms ImageJ/FIJI Schneider et al. https://imagej.net/ij/ Imaris Cell Module Bitplane (Oxford Instruments) https://imaris.oxinst.com SpectroFlo Software v3.3.0 Cytek Biosciences https://cytekbio.com QuantStudio Software v1.1 Applied Biosystems N/A MaxQuant v1.5.2.8 Cox & Mann https://www.maxquant.org IDEAS v6.2 software Amnis Corp. N/A R v4.3.3 R Foundation https://www.r-project.org Perseus software MaxQuant https://maxquant.net/perseus/ STAR aligner Dobin et al. https://github.com/alexdobin/STAR DESeq2 Love et al. https://bioconductor.org DEXSeq Anders et al. https://bioconductor.org Other Nanosight NS300 Malvern Instruments N/A Cytek Aurora spectral flow cytometer Cytek Biosciences N/A ImageStreamX mark II imaging flow-cytometer Amnis Corp. N/A Leica DMi8 confocal microscope Leica Microsystems N/A Q Exactive HFX mass spectrometer Thermo Fisher Scientific N/A JPK Nanowizard III AFM JPK Instruments N/A Cell Reports 45, 116953, February 24, 2026 17 D910-100ML) in a humidified incubator at 37 ◦ C in 5% CO 2 . ..

    Real-time Polymerase Chain Reaction:

    Article Title: Nuclear import of malaria RNA rewires splicing in host immune cells.
    Article Snippet: 13 Briefly, THP-1 cells were grown in complete RPMI-1640 (Sartorius, 01-100-1A) supplemented with 10% fetal bovine serum (Sigma, F7524), 1% non-essential amino acids (Sartorius, 01-340-1B), and 0.1% penicillin/streptomycin solution (Diagnovum, .. REAGENT or RESOURCE SOURCE IDENTIFIER RNeasy Mini Kit Qiagen Cat# 74104 Qubit RNA BR assay kit Thermo Fisher Scientific Cat# Q10210 TruSeq Stranded mRNA Library Prep Kit Illumina N/A HiScribe T7 In Vitro Transcription Kit New England Biolabs Cat# E2040S HCR v3.0 smFISH assay (B1/B2/B3 amplifier system) Molecular Instruments https://www.molecularinstruments.com Deposited data RNA-seq data This paper PRJNA1258730 Proteomics (SILAC-MS) data This paper PXD054139 Proteomics (RNA antisense purification-MS) data This paper PXD054139 Experimental models: Cell lines Plasmodium falciparum NF54 strain MR4 MRA-1000 Human monocytic cell line THP-1 ATCC TIB-202 Oligonucleotides qPCR primers for Pf and human genes This paper See Tables S1 and S2 RNA antisense probes for ETRAMP11.2 This paper See Table S2 Software and algorithms ImageJ/FIJI Schneider et al. https://imagej.net/ij/ Imaris Cell Module Bitplane (Oxford Instruments) https://imaris.oxinst.com SpectroFlo Software v3.3.0 Cytek Biosciences https://cytekbio.com QuantStudio Software v1.1 Applied Biosystems N/A MaxQuant v1.5.2.8 Cox & Mann https://www.maxquant.org IDEAS v6.2 software Amnis Corp. N/A R v4.3.3 R Foundation https://www.r-project.org Perseus software MaxQuant https://maxquant.net/perseus/ STAR aligner Dobin et al. https://github.com/alexdobin/STAR DESeq2 Love et al. https://bioconductor.org DEXSeq Anders et al. https://bioconductor.org Other Nanosight NS300 Malvern Instruments N/A Cytek Aurora spectral flow cytometer Cytek Biosciences N/A ImageStreamX mark II imaging flow-cytometer Amnis Corp. N/A Leica DMi8 confocal microscope Leica Microsystems N/A Q Exactive HFX mass spectrometer Thermo Fisher Scientific N/A JPK Nanowizard III AFM JPK Instruments N/A Cell Reports 45, 116953, February 24, 2026 17 D910-100ML) in a humidified incubator at 37 ◦ C in 5% CO 2 . ..

    Flow Cytometry:

    Article Title: Nuclear import of malaria RNA rewires splicing in host immune cells.
    Article Snippet: 13 Briefly, THP-1 cells were grown in complete RPMI-1640 (Sartorius, 01-100-1A) supplemented with 10% fetal bovine serum (Sigma, F7524), 1% non-essential amino acids (Sartorius, 01-340-1B), and 0.1% penicillin/streptomycin solution (Diagnovum, .. REAGENT or RESOURCE SOURCE IDENTIFIER RNeasy Mini Kit Qiagen Cat# 74104 Qubit RNA BR assay kit Thermo Fisher Scientific Cat# Q10210 TruSeq Stranded mRNA Library Prep Kit Illumina N/A HiScribe T7 In Vitro Transcription Kit New England Biolabs Cat# E2040S HCR v3.0 smFISH assay (B1/B2/B3 amplifier system) Molecular Instruments https://www.molecularinstruments.com Deposited data RNA-seq data This paper PRJNA1258730 Proteomics (SILAC-MS) data This paper PXD054139 Proteomics (RNA antisense purification-MS) data This paper PXD054139 Experimental models: Cell lines Plasmodium falciparum NF54 strain MR4 MRA-1000 Human monocytic cell line THP-1 ATCC TIB-202 Oligonucleotides qPCR primers for Pf and human genes This paper See Tables S1 and S2 RNA antisense probes for ETRAMP11.2 This paper See Table S2 Software and algorithms ImageJ/FIJI Schneider et al. https://imagej.net/ij/ Imaris Cell Module Bitplane (Oxford Instruments) https://imaris.oxinst.com SpectroFlo Software v3.3.0 Cytek Biosciences https://cytekbio.com QuantStudio Software v1.1 Applied Biosystems N/A MaxQuant v1.5.2.8 Cox & Mann https://www.maxquant.org IDEAS v6.2 software Amnis Corp. N/A R v4.3.3 R Foundation https://www.r-project.org Perseus software MaxQuant https://maxquant.net/perseus/ STAR aligner Dobin et al. https://github.com/alexdobin/STAR DESeq2 Love et al. https://bioconductor.org DEXSeq Anders et al. https://bioconductor.org Other Nanosight NS300 Malvern Instruments N/A Cytek Aurora spectral flow cytometer Cytek Biosciences N/A ImageStreamX mark II imaging flow-cytometer Amnis Corp. N/A Leica DMi8 confocal microscope Leica Microsystems N/A Q Exactive HFX mass spectrometer Thermo Fisher Scientific N/A JPK Nanowizard III AFM JPK Instruments N/A Cell Reports 45, 116953, February 24, 2026 17 D910-100ML) in a humidified incubator at 37 ◦ C in 5% CO 2 . ..

    Microscopy:

    Article Title: Nuclear import of malaria RNA rewires splicing in host immune cells.
    Article Snippet: 13 Briefly, THP-1 cells were grown in complete RPMI-1640 (Sartorius, 01-100-1A) supplemented with 10% fetal bovine serum (Sigma, F7524), 1% non-essential amino acids (Sartorius, 01-340-1B), and 0.1% penicillin/streptomycin solution (Diagnovum, .. REAGENT or RESOURCE SOURCE IDENTIFIER RNeasy Mini Kit Qiagen Cat# 74104 Qubit RNA BR assay kit Thermo Fisher Scientific Cat# Q10210 TruSeq Stranded mRNA Library Prep Kit Illumina N/A HiScribe T7 In Vitro Transcription Kit New England Biolabs Cat# E2040S HCR v3.0 smFISH assay (B1/B2/B3 amplifier system) Molecular Instruments https://www.molecularinstruments.com Deposited data RNA-seq data This paper PRJNA1258730 Proteomics (SILAC-MS) data This paper PXD054139 Proteomics (RNA antisense purification-MS) data This paper PXD054139 Experimental models: Cell lines Plasmodium falciparum NF54 strain MR4 MRA-1000 Human monocytic cell line THP-1 ATCC TIB-202 Oligonucleotides qPCR primers for Pf and human genes This paper See Tables S1 and S2 RNA antisense probes for ETRAMP11.2 This paper See Table S2 Software and algorithms ImageJ/FIJI Schneider et al. https://imagej.net/ij/ Imaris Cell Module Bitplane (Oxford Instruments) https://imaris.oxinst.com SpectroFlo Software v3.3.0 Cytek Biosciences https://cytekbio.com QuantStudio Software v1.1 Applied Biosystems N/A MaxQuant v1.5.2.8 Cox & Mann https://www.maxquant.org IDEAS v6.2 software Amnis Corp. N/A R v4.3.3 R Foundation https://www.r-project.org Perseus software MaxQuant https://maxquant.net/perseus/ STAR aligner Dobin et al. https://github.com/alexdobin/STAR DESeq2 Love et al. https://bioconductor.org DEXSeq Anders et al. https://bioconductor.org Other Nanosight NS300 Malvern Instruments N/A Cytek Aurora spectral flow cytometer Cytek Biosciences N/A ImageStreamX mark II imaging flow-cytometer Amnis Corp. N/A Leica DMi8 confocal microscope Leica Microsystems N/A Q Exactive HFX mass spectrometer Thermo Fisher Scientific N/A JPK Nanowizard III AFM JPK Instruments N/A Cell Reports 45, 116953, February 24, 2026 17 D910-100ML) in a humidified incubator at 37 ◦ C in 5% CO 2 . ..

    Mass Spectrometry:

    Article Title: Nuclear import of malaria RNA rewires splicing in host immune cells.
    Article Snippet: 13 Briefly, THP-1 cells were grown in complete RPMI-1640 (Sartorius, 01-100-1A) supplemented with 10% fetal bovine serum (Sigma, F7524), 1% non-essential amino acids (Sartorius, 01-340-1B), and 0.1% penicillin/streptomycin solution (Diagnovum, .. REAGENT or RESOURCE SOURCE IDENTIFIER RNeasy Mini Kit Qiagen Cat# 74104 Qubit RNA BR assay kit Thermo Fisher Scientific Cat# Q10210 TruSeq Stranded mRNA Library Prep Kit Illumina N/A HiScribe T7 In Vitro Transcription Kit New England Biolabs Cat# E2040S HCR v3.0 smFISH assay (B1/B2/B3 amplifier system) Molecular Instruments https://www.molecularinstruments.com Deposited data RNA-seq data This paper PRJNA1258730 Proteomics (SILAC-MS) data This paper PXD054139 Proteomics (RNA antisense purification-MS) data This paper PXD054139 Experimental models: Cell lines Plasmodium falciparum NF54 strain MR4 MRA-1000 Human monocytic cell line THP-1 ATCC TIB-202 Oligonucleotides qPCR primers for Pf and human genes This paper See Tables S1 and S2 RNA antisense probes for ETRAMP11.2 This paper See Table S2 Software and algorithms ImageJ/FIJI Schneider et al. https://imagej.net/ij/ Imaris Cell Module Bitplane (Oxford Instruments) https://imaris.oxinst.com SpectroFlo Software v3.3.0 Cytek Biosciences https://cytekbio.com QuantStudio Software v1.1 Applied Biosystems N/A MaxQuant v1.5.2.8 Cox & Mann https://www.maxquant.org IDEAS v6.2 software Amnis Corp. N/A R v4.3.3 R Foundation https://www.r-project.org Perseus software MaxQuant https://maxquant.net/perseus/ STAR aligner Dobin et al. https://github.com/alexdobin/STAR DESeq2 Love et al. https://bioconductor.org DEXSeq Anders et al. https://bioconductor.org Other Nanosight NS300 Malvern Instruments N/A Cytek Aurora spectral flow cytometer Cytek Biosciences N/A ImageStreamX mark II imaging flow-cytometer Amnis Corp. N/A Leica DMi8 confocal microscope Leica Microsystems N/A Q Exactive HFX mass spectrometer Thermo Fisher Scientific N/A JPK Nanowizard III AFM JPK Instruments N/A Cell Reports 45, 116953, February 24, 2026 17 D910-100ML) in a humidified incubator at 37 ◦ C in 5% CO 2 . ..



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    Imagej Image Analysis Software, supplied by Carl Zeiss, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/imagej+analysis/Stereomicroscope+Stemi+508/10__1002_slash_adfm__202425715-306-42-39
    Average 97 stars, based on 1 article reviews
    imagej image analysis software - by Bioz Stars, 2026-09
    97/100 stars
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